Gene: AT3G49170

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G49170
  • Transcript Identifier AT3G49170.1
  • Gene Type Coding gene
  • Location Chr3 : 18226954-18229600 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G49170.1
  • symbol EMB2261
  • full_name embryo defective 2261
  • uniprot Q5G1T1

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description embryo defective 2261 (EMB2261); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48732 Blast hits to 14187 proteins in 273 species: Archae - 0; Bacteria - 16; Metazoa - 205; Fungi - 147; Plants - 47588; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
IPR032867 DYW domain
Mapman id Description
16.11.3.3.4.55 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ECD1)