Gene: Sopen01g040060

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g040060
  • Transcript Identifier Sopen01g040060.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 97684148-97685855 : positive

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g040060.1

Descriptions

  • Description Ubiquitin extension protein | ubiquitin extension protein 1 (UBQ1) | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: response to water deprivation, protein ubiquitination, embryo development ending in seed dormancy | LOCATED IN: ribosome, intracellular | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e , Ubiquitin subgroup , Ubiquitin conserved site , Ubiquitin , Ubiquitin supergroup | BEST Arabidopsis thaliana protein match is: Ubiquitin supergroup, Ribosomal protein L40e
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
InterProtranslation
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT3G52590

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G36170

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
InterProribosome
GO:0022625
ISO
PLAZA Integrative Orthologycytosolic large ribosomal subunit AT2G36170
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G36170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038587 Ribosomal protein L40e superfamily
IPR000626 Ubiquitin-like domain
IPR001975 Ribosomal protein L40e
IPR011332 Zinc-binding ribosomal protein
IPR019956 Ubiquitin domain
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
17.1.2.1.43 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL40