Gene: Sopen01g031030

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g031030
  • Transcript Identifier Sopen01g031030.2
  • Gene Type Coding gene
  • Location Spenn-ch01 : 88492897-88497084 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g031030.2

Descriptions

  • Description RNA helicase family protein | FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity | LOCATED IN: nucleolus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Helicase-associated domain , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , Domain of unknown function DUF1605 , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: RNA helicase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g079250.3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
InterProhelicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0005524
IEA
InterProATP binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G47250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT2G47250
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G62310
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G62310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003593 AAA+ ATPase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR007502 Helicase-associated domain
IPR044756 DHX15, DEXH-box helicase domain
IPR001650 Helicase, C-terminal
Mapman id Description
35.1 not assigned.annotated