Gene: Sopen01g030850

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g030850
  • Transcript Identifier Sopen01g030850.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 88216560-88221266 : positive

Gene Family Information

  • ID HOM05D001283
  • #Genes/#Species 488/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g030850.1

Descriptions

  • Description encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. | SC35-like splicing factor 28 (SCL28) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome | LOCATED IN: nuclear speck, nucleus | EXPRESSED IN: cultured cell | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT3G55460
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT5G18810

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT3G55460
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18810
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G55460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G18810
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT5G18810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
Mapman id Description
16.2.6.2 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SCL28/30/33)