Gene: Sopen01g021920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g021920
  • Transcript Identifier Sopen01g021920.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 65904659-65907989 : negative

Gene Family Information

  • ID HOM05D003014
  • #Genes/#Species 229/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g021920.1

Descriptions

  • Description Encodes a member of the basic helix loop helix family of transcription factors. Loss of RGE1 function causes shriveled seeds that contain small embryos. The cuticle in the embryos does not develop normally, possible due to the adeherence of the endosperm to the developing embryo. RGE1 is expressed in the endosperm surrounding region which directly surrounds the developing embryo, however it exerts its effect non autonomously- in the developing embryo. Mutant seedlings are extremely sensitive to dessication due to the abnormal cuticle. | RETARDED GROWTH OF EMBRYO 1 (RGE1) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: embryo development, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: endosperm | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009960
IEA
InterProendosperm development
GO:0010162
ISO
PLAZA Integrative Orthologyseed dormancy process AT1G49770
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G49770
GO:0048317
ISO
PLAZA Integrative Orthologyseed morphogenesis AT1G49770
GO:0010115
ISO
PLAZA Integrative Orthologyregulation of abscisic acid biosynthetic process AT1G49770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0046983
IEA
InterProprotein dimerization activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044278 Transcription factor BHLH95-like
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)