Gene: AT3G52380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52380
  • Transcript Identifier AT3G52380.1
  • Gene Type Coding gene
  • Location Chr3 : 19421619-19422855 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52380.1
  • symbol CP33
  • Alias PDE322,PIGMENT DEFECTIVE 322
  • uniprot Q39061

Descriptions

  • Description chloroplast RNA-binding protein 33
  • Computational description chloroplast RNA-binding protein 33 (CP33); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 514069 Blast hits to 499112 proteins in 22048 species: Archae - 10752; Bacteria - 302541; Metazoa - 101965; Fungi - 16255; Plants - 33338; Viruses - 35348; Other Eukaryotes - 13870 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:1901259
IMP
IBA
Gene Ontologychloroplast rRNA processing1 2
GO:0031425
IMP
Gene Ontologychloroplast RNA processing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 3 4
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
ISS
Gene OntologyRNA binding2 5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009579
IDA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid6
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast2 7
GO:0009535
IBA
Gene Ontologychloroplast thylakoid membrane1
GO:0005829
HDA
Gene Ontologycytosol8
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma2 9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.2.3 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP33a)