Gene: Sopen01g001670

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g001670
  • Transcript Identifier Sopen01g001670.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 604649-606764 : positive

Gene Family Information

  • ID HOM05D000008
  • #Genes/#Species 9932/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g001670.1

Descriptions

  • Description Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches). | myb domain protein 5 (MYB5) | CONTAINS InterPro DOMAIN/s: SANT, DNA-binding , Homeodomain-like , Myb, DNA-binding , HTH transcriptional regulator, Myb-type, DNA-binding , Homeodomain-related , Myb transcription factor | BEST Arabidopsis thaliana protein match is: myb domain protein 17
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT3G27920
GO:0032880
ISO
PLAZA Integrative Orthologyregulation of protein localization AT3G27920
GO:0010090
ISO
PLAZA Integrative Orthologytrichome morphogenesis AT3G13540
GO:0009740
ISO
PLAZA Integrative Orthologygibberellic acid mediated signaling pathway AT3G27920
GO:0048629
ISO
PLAZA Integrative Orthologytrichome patterning AT3G27920
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT3G27920
GO:0048354
ISO
PLAZA Integrative Orthologymucilage biosynthetic process involved in seed coat development AT3G13540
GO:0010468
ISO
PLAZA Integrative Orthologyregulation of gene expression AT3G13540
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT3G13540
GO:0001708
ISO
PLAZA Integrative Orthologycell fate specification AT3G27920
GO:2000039
ISO
PLAZA Integrative Orthologyregulation of trichome morphogenesis AT3G27920
GO:0010026
ISO
PLAZA Integrative Orthologytrichome differentiation AT3G27920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT3G13540
GO:0003700
ISO
PLAZA Integrative OrthologyDNA-binding transcription factor activity AT3G27920
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G27920

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G27920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR009057 Homeobox-like domain superfamily
IPR017930 Myb domain
Mapman id Description
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)