Gene: Sopen00g004190

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen00g004190
  • Transcript Identifier Sopen00g004190.1
  • Gene Type Coding gene
  • Location Spenn-ch00 : 10416527-10420509 : positive

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen00g004190.1

Descriptions

  • Description Encodes a protein with serine hydroxymethyltransferase activity which is thought to be localized in the mitochondrial matrix. SHM2 expression fails to rescue the conditional lethal phenotype of the shm1-1 mutant, defective in SHM1. | serine hydroxymethyltransferase 2 (SHM2) | FUNCTIONS IN: glycine hydroxymethyltransferase activity, cobalt ion binding, zinc ion binding | INVOLVED IN: glycine metabolic process, L-serine metabolic process | LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain , Serine hydroxymethyltransferase, pyridoxal phosphate binding site , Pyridoxal phosphate-dependent transferase, major region, subdomain 1 , Serine hydroxymethyltransferase | BEST Arabidopsis thaliana protein match is: serine transhydroxymethyltransferase 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019264
IEA
InterProglycine biosynthetic process from serine
GO:0035999
IEA
InterProtetrahydrofolate interconversion
GO:0006563
ISO
PLAZA Integrative OrthologyL-serine metabolic process AT5G26780
GO:0006544
ISO
PLAZA Integrative Orthologyglycine metabolic process AT5G26780

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding AT5G26780
GO:0050897
ISO
PLAZA Integrative Orthologycobalt ion binding AT5G26780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005747
ISO
PLAZA Integrative Orthologymitochondrial respiratory chain complex I AT5G26780
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G26780
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G26780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR001085 Serine hydroxymethyltransferase
IPR039429 Serine hydroxymethyltransferase-like domain
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)