Gene: Solyc12g098940.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g098940.2
  • Transcript Identifier Solyc12g098940.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 65816885-65817355 : negative

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g098940.2.1
  • uniprot A0A3Q7JDE8
  • gene_id Solyc12g098940

Descriptions

  • Description Ubiquitin (AHRD V3.3 *** B1P770_LOLTE)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019941
IBA
GOA Databasemodification-dependent protein catabolic process
GO:0016567
IBA
GOA Databaseprotein ubiquitination
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G47110
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0031386
IBA
GOA Databaseprotein tag
GO:0031625
IBA
GOA Databaseubiquitin protein ligase binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G23410
GO:0005622
ISO
PLAZA Integrative Orthologyintracellular anatomical structure AT2G47110
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT2G47110
GO:0022627
ISO
PLAZA Integrative Orthologycytosolic small ribosomal subunit AT2G47110
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G23410
GO:0005634
IBA
GOA Databasenucleus
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002906 Ribosomal protein S27a
IPR000626 Ubiquitin-like domain
IPR038582 S27a-like superfamily
IPR019956 Ubiquitin domain
IPR011332 Zinc-binding ribosomal protein
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
17.1.3.1.29 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS27a