Gene: Solyc12g088210.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g088210.3
  • Transcript Identifier Solyc12g088210.3.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 63218315-63223603 : positive

Gene Family Information

  • ID HOM05D000676
  • #Genes/#Species 848/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g088210.3.1
  • uniprot A0A3Q7JXS0
  • gene_id Solyc12g088210

Descriptions

  • Description Endo-1,4-beta-xylanase 1 (AHRD V3.3 *** XYN1_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
GOA Databasehydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016798
IEA
InterProhydrolase activity, acting on glycosyl bonds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0031176
ISO
PLAZA Integrative Orthologyendo-1,4-beta-xylanase activity AT1G58370

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT1G58370

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001000 Glycoside hydrolase family 10 domain
IPR017853 Glycoside hydrolase superfamily
IPR008979 Galactose-binding-like domain superfamily
IPR003305 Carbohydrate-binding, CenC-like
IPR044846 Glycoside hydrolase family 10
Mapman id Description
21.2.2.2.4 Cell wall organisation.hemicellulose.xylan.modification and degradation.endo-beta-1,4-xylanase