Gene: Solyc11g033280.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g033280.2
  • Transcript Identifier Solyc11g033280.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 25579530-25585161 : negative

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g033280.2.1
  • uniprot A0A3Q7IVC4
  • gene_id Solyc11g033280

Descriptions

  • Description ATP-dependent RNA helicase (AHRD V3.3 *** U9T5U8_RHIID)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT3G19760
GO:0001666
ISO
PLAZA Integrative Orthologyresponse to hypoxia AT3G19760

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G19760
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT3G19760
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G19760
GO:0035145
ISO
PLAZA Integrative Orthologyexon-exon junction complex AT3G19760
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G19760
GO:0005730
IBA
GOA Databasenucleolus
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
17.3.1.1.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).core components.helicase component eIF4A3