Gene: Solyc09g007440.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g007440.3
  • Transcript Identifier Solyc09g007440.3.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 1018850-1024343 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g007440.3.1
  • uniprot A0A3Q7HY30
  • gene_id Solyc09g007440

Descriptions

  • Description DEAD-box ATP-dependent RNA helicase 57 (AHRD V3.3 *** A0A2G2YQB7_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030490
IEA
GOA Databasematuration of SSU-rRNA
GO:0030490
IEA
InterPromaturation of SSU-rRNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR044764 DDX52/Rok1, DEAD-box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
17.1.1.6 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.RNA helicase (ROK1)