Gene: Solyc08g080120.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g080120.3
  • Transcript Identifier Solyc08g080120.3.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 61570886-61574914 : positive

Gene Family Information

  • ID HOM05D001212
  • #Genes/#Species 516/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g080120.3.1
  • uniprot A0A3Q7IPR5
  • gene_id Solyc08g080120

Descriptions

  • Description LEU76410 homeobox 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:2000652
ISO
PLAZA Integrative Orthologyregulation of secondary cell wall biogenesis AT1G62990
GO:0010089
ISO
PLAZA Integrative Orthologyxylem development AT1G62990
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT1G62990
GO:0080112
ISO
PLAZA Integrative Orthologyseed growth AT1G62990
GO:0080001
ISO
PLAZA Integrative Orthologymucilage extrusion from seed coat AT1G62990
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G62990
GO:0010192
ISO
PLAZA Integrative Orthologymucilage biosynthetic process AT1G62990
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G62990
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000978
IBA
GOA DatabaseRNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981
IBA
GOA DatabaseDNA-binding transcription factor activity, RNA polymerase II-specific

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001356 Homeobox domain
IPR005541 KNOX2
IPR008422 Homeobox KN domain
IPR005540 KNOX1
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX)