Gene: Solyc08g080100.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g080100.4
  • Transcript Identifier Solyc08g080100.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 61528593-61539723 : negative

Gene Family Information

  • ID HOM05D118040
  • #Genes/#Species 1 / 1(orphan gene)
  • Phylogenetic origin
  • ID ORTHO05D480697
  • #Genes/#Species 1 / 1(orphan gene)
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g080100.4.1
  • uniprot A0A3Q7HVL9
  • gene_id Solyc08g080100

Descriptions

  • Description MADS box transcription factor AGAMOUS (AHRD V3.3 *-* A0A1Q1NK16_PAELC)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
GOA Databaseprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0000977
IEA
GOA DatabaseRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002487 Transcription factor, K-box
IPR002100 Transcription factor, MADS-box
IPR036879 Transcription factor, MADS-box superfamily
IPR033896 MADS MEF2-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)