Gene: Solyc08g005400.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g005400.4
  • Transcript Identifier Solyc08g005400.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 312843-318036 : positive

Gene Family Information

  • ID HOM05D001165
  • #Genes/#Species 531/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g005400.4.1
  • uniprot A0A3Q7HJM1
  • gene_id Solyc08g005400

Descriptions

  • Description DNA (Cytosine-5)-methyltransferase CMT2 (AHRD V3.3 *** A0A2G3ANN9_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006325
IEA
GOA Databasechromatin organization
GO:0034605
ISO
PLAZA Integrative Orthologycellular response to heat AT4G19020
GO:0010426
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine within a CHH sequence AT4G19020

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003682
IEA
GOA Databasechromatin binding
GO:0003886
ISO
PLAZA Integrative OrthologyDNA (cytosine-5-)-methyltransferase activity AT4G19020

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001525 C-5 cytosine methyltransferase
IPR000953 Chromo/chromo shadow domain
IPR016197 Chromo-like domain superfamily
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR023780 Chromo domain
Mapman id Description
12.5.2.4 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT)