Gene: Solyc07g018270.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g018270.3
  • Transcript Identifier Solyc07g018270.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 10056754-10067673 : positive

Gene Family Information

  • ID HOM05D000809
  • #Genes/#Species 730/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g018270.3.1
  • uniprot H9E8V0
  • gene_id Solyc07g018270

Descriptions

  • Description VIN3-like protein 2 (AHRD V3.3 *** A0A2I4FHF7_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G30200
GO:1900111
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation AT4G30200
GO:0048587
ISO
PLAZA Integrative Orthologyregulation of short-day photoperiodism, flowering AT4G30200
GO:0032922
ISO
PLAZA Integrative Orthologycircadian regulation of gene expression AT4G30200
GO:0001666
IEA
GOA Databaseresponse to hypoxia
GO:0009409
IEA
GOA Databaseresponse to cold
GO:0010048
IEA
GOA Databasevernalization response
GO:0010048
IEA
InterProvernalization response
GO:0051571
IEA
GOA Databasepositive regulation of histone H3-K4 methylation
GO:0061087
IEA
GOA Databasepositive regulation of histone H3-K27 methylation
GO:0045814
IEA
GOA Databasenegative regulation of gene expression, epigenetic
GO:0070417
IEA
GOA Databasecellular response to cold
GO:0040029
IEA
GOA Databaseregulation of gene expression, epigenetic
GO:0040029
IEA
InterProregulation of gene expression, epigenetic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035064
ISO
PLAZA Integrative Orthologymethylated histone binding AT4G30200
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT4G30200
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IEA
GOA Databasenuclear speck
GO:0031519
ISO
PLAZA Integrative OrthologyPcG protein complex AT4G30200
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G30200
GO:0005677
IEA
GOA Databasechromatin silencing complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032881 Oberon, PHD finger domain
IPR044514 Vernalization insensitive 3-like
IPR003961 Fibronectin type III
Mapman id Description
12.3.3.2.1.2.2 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting factor (VIN3/VEL)