Gene: AT4G30200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G30200
  • Transcript Identifier AT4G30200.2
  • Gene Type Coding gene
  • Location Chr4 : 14786852-14790070 : negative

Gene Family Information

  • ID HOM05D000809
  • #Genes/#Species 730/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G30200.2
  • symbol VEL1
  • Alias VIL2,VIN3-Like 2
  • full_name vernalization5/VIN3-like 1
  • uniprot Q9SUM4

Descriptions

  • Description vernalization5/VIN3-like protein
  • Computational description vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
  • Computational description vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 283 Blast hits to 258 proteins in 40 species: Archae - 0; Bacteria - 10; Metazoa - 3; Fungi - 23; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048587
IMP
Gene Ontologyregulation of short-day photoperiodism, flowering1
GO:0040029
IEA
Gene Ontologyregulation of gene expression, epigenetic
GO:0040029
IEA
InterProregulation of gene expression, epigenetic
GO:0010048
IEA
Gene Ontologyvernalization response
GO:0010048
IEA
InterProvernalization response
GO:0009908
IEA
GOA Databaseflower development
GO:1900111
IDA
Gene Ontologypositive regulation of histone H3-K9 dimethylation1
GO:0032922
IEP
Gene Ontologycircadian regulation of gene expression1
GO:0010228
IPI
Gene Ontologyvegetative to reproductive phase transition of meristem2
GO:0009409
IEP
Gene Ontologyresponse to cold3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0035064
IDA
Gene Ontologymethylated histone binding1
GO:0042802
IDA
Gene Ontologyidentical protein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0031519
IDA
Gene OntologyPcG protein complex2
GO:0005677
IDA
Gene Ontologychromatin silencing complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036116 Fibronectin type III superfamily
IPR003961 Fibronectin type III
IPR013783 Immunoglobulin-like fold
IPR044514 Vernalization insensitive 3-like
IPR032881 Oberon, PHD finger domain
Mapman id Description
12.3.3.2.1.2.2 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting factor (VIN3/VEL)