Gene: Solyc07g008050.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g008050.4
  • Transcript Identifier Solyc07g008050.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 2737899-2742425 : negative

Gene Family Information

  • ID HOM05D002499
  • #Genes/#Species 272/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g008050.4.1
  • uniprot A0A3Q7H4R0
  • gene_id Solyc07g008050

Descriptions

  • Description Zinc finger (Ubiquitin-hydrolase) domain-containing protein (AHRD V3.3 *** A0A2U1NFG2_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010029
IEA
GOA Databaseregulation of seed germination
GO:0010029
IEA
InterProregulation of seed germination
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G42160
GO:0046982
ISO
PLAZA Integrative Orthologyprotein heterodimerization activity AT2G42160

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000151
IEA
GOA Databaseubiquitin ligase complex
GO:0000151
IEA
InterProubiquitin ligase complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033273 RING domain containing protein BRIZ1/BRIZ2
IPR001607 Zinc finger, UBP-type
IPR011422 BRCA1-associated 2
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.3.4 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.ubiquitin protein ligase (BRIZ)