Gene: Solyc06g084400.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g084400.3
  • Transcript Identifier Solyc06g084400.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 47103614-47104255 : positive

Gene Family Information

  • ID HOM05D001776
  • #Genes/#Species 367/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g084400.3.1
  • uniprot A0A3Q7H5F6
  • gene_id Solyc06g084400

Descriptions

  • Description Methyl-CpG-binding domain-containing protein 1 (AHRD V3.3 *** A0A2G3CCG5_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G63030
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT3G63030

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016177 DNA-binding domain superfamily
IPR011124 Zinc finger, CW-type
IPR001739 Methyl-CpG DNA binding
Mapman id Description
12.5.4.1 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD1-4/12)