Gene: Solyc06g076640.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc06g076640.3
- Transcript Identifier Solyc06g076640.3.1
- Gene Type Coding gene
- Location SL4.0ch06 : 45272878-45275457 : negative
Gene Family Information
- ID HOM05D000282
- #Genes/#Species 1541/100
- Phylogenetic origin
- ID ORTHO05D000272
- #Genes/#Species 1231/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc06g076640.3.1
- uniprot A0A3Q7H0U0
- gene_id Solyc06g076640
Descriptions
- Description Tubulin beta chain (AHRD V3.3 *** A0A1U8H9E6_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000278 | IBA | GOA Database | mitotic cell cycle | |
| GO:0000226 | IBA | GOA Database | microtubule cytoskeleton organization | |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G20890 |
| GO:0007017 | IEA | GOA Database | microtubule-based process | |
| GO:0007017 | IEA | InterPro | microtubule-based process | |
| GO:0098869 | IEA | GOA Database | cellular oxidant detoxification | |
| GO:0042744 | IEA | GOA Database | hydrogen peroxide catabolic process | |
| GO:0006979 | IEA | GOA Database | response to oxidative stress |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G44340 |
| GO:0005200 | IBA IEA | GOA Database | structural constituent of cytoskeleton | |
| GO:0005200 | IEA | InterPro | structural constituent of cytoskeleton | |
| GO:0005525 | IBA IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0020037 | IEA | GOA Database | heme binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G44340 |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003924 | IEA | GOA Database | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0004601 | IEA | GOA Database | peroxidase activity | |
| GO:0016491 | IEA | GOA Database | oxidoreductase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005874 | IBA IEA | GOA Database | microtubule | |
| GO:0005874 | IEA | InterPro | microtubule | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT5G44340 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT4G20890 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G44340 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT5G44340 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G44340 |
| GO:0005794 | ISO | PLAZA Integrative Orthology | Golgi apparatus | AT5G44340 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT4G20890 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT5G44340 |
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0005576 | IEA | GOA Database | extracellular region |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR037103 | Tubulin/FtsZ-like, C-terminal domain |
| IPR036525 | Tubulin/FtsZ, GTPase domain superfamily |
| IPR000217 | Tubulin |
| IPR008280 | Tubulin/FtsZ, C-terminal |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain |
| IPR023123 | Tubulin, C-terminal |
| IPR003008 | Tubulin/FtsZ, GTPase domain |
| IPR002453 | Beta tubulin |
| Mapman id | Description |
|---|---|
| 20.1.1.2 | Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin |