Gene: Solyc06g070980.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g070980.3
  • Transcript Identifier Solyc06g070980.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 41252848-41255976 : negative

Gene Family Information

  • ID HOM05D000050
  • #Genes/#Species 4474/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g070980.3.1
  • uniprot K4C8H1
  • gene_id Solyc06g070980

Descriptions

  • Description Ubiquitin-conjugating enzyme (AHRD V3.3 *** A0A200QF19_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016574
IBA
GOA Databasehistone ubiquitination
GO:0033523
ISO
PLAZA Integrative Orthologyhistone H2B ubiquitination AT2G02760
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT2G02760
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT1G14400
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT1G14400
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G02760
GO:0009650
ISO
PLAZA Integrative OrthologyUV protection AT2G02760
GO:0000209
IBA
GOA Databaseprotein polyubiquitination
GO:0006281
IBA
GOA DatabaseDNA repair
GO:0043161
IBA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT2G02760
GO:0005524
IEA
GOA DatabaseATP binding
GO:0061631
IBA
GOA Databaseubiquitin conjugating enzyme activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G02760
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
IPR000608 Ubiquitin-conjugating enzyme E2
Mapman id Description
19.2.2.1.3 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-conjugating E2 protein (UBC)