Gene: Solyc06g048510.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g048510.4
  • Transcript Identifier Solyc06g048510.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 28864903-28869178 : positive

Gene Family Information

  • ID HOM05D001050
  • #Genes/#Species 579/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g048510.4.1
  • uniprot A0A3Q7HMK3
  • gene_id Solyc06g048510

Descriptions

  • Description WD-40 repeat containing protein (AHRD V3.3 *** A0A0K0XR03_TOBAC)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0044804
IBA
GOA Databaseautophagy of nucleus
GO:0006497
IBA
GOA Databaseprotein lipidation
GO:0034497
IBA
GOA Databaseprotein localization to phagophore assembly site
GO:0000422
IBA
GOA Databaseautophagy of mitochondrion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0080025
IBA
GOA Databasephosphatidylinositol-3,5-bisphosphate binding
GO:0032266
IBA
GOA Databasephosphatidylinositol-3-phosphate binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019898
IBA
GOA Databaseextrinsic component of membrane
GO:0034045
IBA
GOA Databasephagophore assembly site membrane
GO:0005829
IBA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
19.3.3.5.1.3 Protein homeostasis.autophagy.phagophore expansion.membrane shuttling.ATG9-2-18 membrane-recruiting complex.component ATG18