Gene: Solyc05g054200.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g054200.4
  • Transcript Identifier Solyc05g054200.4.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 63537686-63545058 : positive

Gene Family Information

  • ID HOM05D002647
  • #Genes/#Species 259/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g054200.4.1
  • uniprot A0A3Q7GNN0
  • gene_id Solyc05g054200

Descriptions

  • Description Transcriptional adapter (AHRD V3.3 *** A0A2G2WV26_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT4G16420
GO:0042127
ISO
PLAZA Integrative Orthologyregulation of cell population proliferation AT4G16420
GO:0009735
ISO
PLAZA Integrative Orthologyresponse to cytokinin AT4G16420
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G16420
GO:0016571
ISO
PLAZA Integrative Orthologyhistone methylation AT4G16420
GO:0006357
IBA
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0006338
IBA
GOA Databasechromatin remodeling
GO:0035066
IBA
GOA Databasepositive regulation of histone acetylation
GO:0035065
IEA
GOA Databaseregulation of histone acetylation
GO:0035065
IEA
InterProregulation of histone acetylation
GO:0045893
IEA
GOA Databasepositive regulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003713
IBA
IEA
GOA Databasetranscription coactivator activity
GO:0003713
IEA
InterProtranscription coactivator activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G16420
GO:0003682
IBA
GOA Databasechromatin binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017930 Myb domain
IPR000433 Zinc finger, ZZ-type
IPR001005 SANT/Myb domain
IPR009057 Homeobox-like domain superfamily
IPR043145 Zinc finger, ZZ-type superfamily
IPR034318 Transcriptional adapter ADA2, plants
IPR016827 Transcriptional adaptor 2
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR041983 ADA2-like, zinc finger, ZZ-type
Mapman id Description
15.3.4.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA2