Gene: Solyc05g005040.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g005040.4
  • Transcript Identifier Solyc05g005040.4.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 104208-108180 : negative

Gene Family Information

  • ID HOM05D000037
  • #Genes/#Species 5045/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g005040.4.1
  • uniprot A0A3Q7GCA4
  • gene_id Solyc05g005040

Descriptions

  • Description Pectin lyase-like superfamily protein (AHRD V3.3 *** Q38958_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT3G26610
GO:0045490
ISO
PLAZA Integrative Orthologypectin catabolic process AT3G26610
GO:0060773
ISO
PLAZA Integrative Orthologyflower phyllotactic patterning AT3G26610
GO:0052546
ISO
PLAZA Integrative Orthologycell wall pectin metabolic process AT3G26610

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IEA
GOA Databasepolygalacturonase activity
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
IEA
GOA Databasecell wall
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT3G26610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012334 Pectin lyase fold
IPR000743 Glycoside hydrolase, family 28
IPR006626 Parallel beta-helix repeat
IPR011050 Pectin lyase fold/virulence factor
Mapman id Description
21.3.5.1.3 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (PGX1)