Gene: AT3G26610

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G26610
  • Transcript Identifier AT3G26610.1
  • Gene Type Coding gene
  • Location Chr3 : 9777025-9780267 : positive

Gene Family Information

  • ID HOM05D000037
  • #Genes/#Species 5045/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G26610.1
  • Alias PGX1,POLYGALACTURONASE INVOLVED IN EXPANSION 1
  • uniprot Q38958

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4342 Blast hits to 4315 proteins in 504 species: Archae - 6; Bacteria - 1404; Metazoa - 14; Fungi - 1284; Plants - 1492; Viruses - 2; Other Eukaryotes - 140 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009826
IMP
Gene Ontologyunidimensional cell growth1
GO:0045490
IMP
Gene Ontologypectin catabolic process1
GO:0052546
IMP
Gene Ontologycell wall pectin metabolic process1
GO:0060773
IMP
Gene Ontologyflower phyllotactic patterning1
GO:0008152
IEA
GOA Databasemetabolic process
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IEA
GOA Databasepolygalacturonase activity
GO:0004650
IDA
Gene Ontologypolygalacturonase activity1
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0048046
IDA
Gene Ontologyapoplast1
GO:0005618
IEA
GOA Databasecell wall

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000743 Glycoside hydrolase, family 28
IPR006626 Parallel beta-helix repeat
IPR011050 Pectin lyase fold/virulence factor
IPR012334 Pectin lyase fold
Mapman id Description
21.3.5.1.3 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (PGX1)