Gene: Solyc04g076790.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g076790.3
  • Transcript Identifier Solyc04g076790.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 59662961-59668162 : positive

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g076790.3.1
  • uniprot A0A3Q7G863
  • gene_id Solyc04g076790

Descriptions

  • Description Serine hydroxymethyltransferase (AHRD V3.3 *** A0A2G2ZR28_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046653
IBA
GOA Databasetetrahydrofolate metabolic process
GO:0006544
ISO
PLAZA Integrative Orthologyglycine metabolic process AT5G26780
GO:0006563
ISO
PLAZA Integrative OrthologyL-serine metabolic process AT5G26780
GO:0019264
IBA
IEA
GOA Databaseglycine biosynthetic process from serine
GO:0019264
IEA
InterProglycine biosynthetic process from serine
GO:0006730
IBA
IEA
GOA Databaseone-carbon metabolic process
GO:0006565
IBA
GOA DatabaseL-serine catabolic process
GO:0046655
IBA
GOA Databasefolic acid metabolic process
GO:0035999
IEA
GOA Databasetetrahydrofolate interconversion
GO:0035999
IEA
InterProtetrahydrofolate interconversion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030170
IBA
IEA
GOA Databasepyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0008270
IBA
GOA Databasezinc ion binding
GO:0004372
IBA
IEA
GOA Databaseglycine hydroxymethyltransferase activity
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity
GO:0050897
IBA
GOA Databasecobalt ion binding
GO:0070905
IBA
GOA Databaseserine binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G26780
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G26780
GO:0005747
ISO
PLAZA Integrative Orthologymitochondrial respiratory chain complex I AT5G26780
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039429 Serine hydroxymethyltransferase-like domain
IPR001085 Serine hydroxymethyltransferase
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)