Gene: Solyc04g076420.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g076420.4
  • Transcript Identifier Solyc04g076420.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 59310530-59315250 : positive

Gene Family Information

  • ID HOM05D000611
  • #Genes/#Species 929/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g076420.4.1
  • uniprot A0A3Q7H0T3
  • gene_id Solyc04g076420

Descriptions

  • Description dsRNA-binding protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT1G09700
GO:0035279
ISO
PLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNA AT1G09700
GO:0010305
ISO
PLAZA Integrative Orthologyleaf vascular tissue pattern formation AT1G09700
GO:0010589
ISO
PLAZA Integrative Orthologyleaf proximal/distal pattern formation AT1G09700
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G09700
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G09700
GO:0009735
ISO
PLAZA Integrative Orthologyresponse to cytokinin AT1G09700
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT1G09700
GO:0031054
ISO
PLAZA Integrative Orthologypre-miRNA processing AT1G09700
GO:0010468
IBA
GOA Databaseregulation of gene expression
GO:0006396
IBA
GOA DatabaseRNA processing
GO:0016075
IEA
GOA DatabaserRNA catabolic process
GO:0016075
IEA
InterProrRNA catabolic process
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G09700
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G09700
GO:0035198
ISO
PLAZA Integrative OrthologymiRNA binding AT1G09700
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0004525
IBA
IEA
GOA Databaseribonuclease III activity
GO:0004525
IEA
InterProribonuclease III activity
GO:0003725
IBA
IEA
GOA Databasedouble-stranded RNA binding
GO:0003725
IEA
InterProdouble-stranded RNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0010445
ISO
PLAZA Integrative Orthologynuclear dicing body AT1G09700
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT1G09700

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011907 Ribonuclease III
IPR044450 AtDRB-like, first double-stranded RNA binding domain, plant
IPR031147 Double-stranded RNA-binding protein
IPR014720 Double-stranded RNA-binding domain
Mapman id Description
16.9.2.1.2 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component HYL1