Gene: Solyc04g045480.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g045480.3
  • Transcript Identifier Solyc04g045480.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 32860127-32868531 : positive

Gene Family Information

  • ID HOM05D004931
  • #Genes/#Species 150/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g045480.3.1
  • uniprot A0A3Q7G380
  • gene_id Solyc04g045480

Descriptions

  • Description Ubiquitin thioesterase (AHRD V3.3 *** A0A2I4FBU8_9ROSI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071108
IBA
IEA
GOA Databaseprotein K48-linked deubiquitination
GO:0016579
IEA
GOA Databaseprotein deubiquitination
GO:0016579
IEA
InterProprotein deubiquitination
GO:0006508
IEA
GOA Databaseproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008234
IEA
GOA Databasecysteine-type peptidase activity
GO:0061815
ISO
PLAZA Integrative Orthologydeubiquitinase, acting on linear ubiquitin AT1G28120
GO:1990380
ISO
PLAZA Integrative OrthologyLys48-specific deubiquitinase activity AT1G28120
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G28120
GO:0004843
IBA
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0043130
IBA
IEA
GOA Databaseubiquitin binding
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0019784
IEA
GOA DatabaseNEDD8-specific protease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042467 Peptidase C65, otubain, subdomain 2
IPR038765 Papain-like cysteine peptidase superfamily
IPR019400 Peptidase C65, otubain
IPR016615 Ubiquitin thioesterase Otubain
IPR042468 Peptidase C65, otubain, subdomain 1
Mapman id Description
19.2.3.1.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.OTU deubiquitinase activities.deubiquitinase (OTU1)
19.2.4.2.3.3 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).substrate processing.deubiquinating protease (OTU1)