Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.1e-170 603.2 302 100.0
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 2.2e-163 578.9 292 98.6
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.5e-132 474.9 312 80.4
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.9e-127 459.5 307 74.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 8.2e-126 454.1 303 74.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 8.2e-126 454.1 297 77.1
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 7.7e-124 447.6 291 77.3
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.0e-123 447.2 303 74.9
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.3e-123 446.8 303 75.2
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.2e-123 446.0 295 75.6
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 3.8e-123 445.3 295 75.3
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.8e-123 445.3 303 74.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 8.5e-123 444.1 303 74.6
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.2e-121 440.3 263 85.9
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.2e-121 440.3 296 75.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.6e-121 439.9 299 74.6
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.7e-121 439.1 300 73.3
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 3.6e-121 438.7 303 72.3
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 6.1e-121 438.0 268 79.5
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 2.3e-120 436.0 302 72.2
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 3.9e-120 435.3 285 74.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.1e-120 434.9 284 76.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 5.1e-120 434.9 303 72.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.5e-119 433.3 296 72.6
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 2.0e-119 433.0 270 80.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.5e-119 432.6 302 71.2
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 4.3e-119 431.8 301 73.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.3e-119 431.8 278 74.5
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 4.3e-119 431.8 303 71.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 4.3e-119 431.8 281 75.1
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 5.7e-119 431.4 302 70.9
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 5.7e-119 431.4 281 75.1
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 7.4e-119 431.0 304 73.0
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 7.4e-119 431.0 302 70.2
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 1.3e-118 430.3 298 73.5
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.7e-118 429.9 279 74.2
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.7e-118 429.9 310 71.3
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 4.8e-118 428.3 276 76.1
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 6.3e-118 427.9 294 70.1
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 6.3e-118 427.9 303 70.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 6.3e-118 427.9 324 69.1
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.4e-117 426.8 290 73.1
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 5.3e-117 424.9 302 71.2
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.2e-116 423.7 283 74.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.2e-116 423.7 321 68.8
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.5e-116 423.3 305 70.5
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.5e-116 423.3 302 68.5
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.5e-116 423.3 294 73.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.5e-116 423.3 297 71.7
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.6e-116 422.5 276 72.5
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.3e-115 420.2 303 69.0
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.8e-115 418.7 278 73.0
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 3.8e-115 418.7 301 70.8
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.0e-115 418.3 310 70.6
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 8.5e-115 417.5 279 72.8
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.1e-114 417.2 312 68.9
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.1e-114 417.2 304 68.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.4e-114 416.8 293 68.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.2e-114 415.6 268 75.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.2e-114 415.6 316 69.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 4.2e-114 415.2 338 65.4
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 7.2e-114 414.5 300 69.7
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.2e-113 413.7 305 70.2
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 7.9e-113 411.0 293 67.9
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.4e-112 410.2 303 67.3
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.3e-112 409.5 304 67.4
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.0e-112 409.1 277 70.4
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.9e-112 408.7 303 67.7
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.1e-111 407.1 270 74.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.6e-111 406.0 358 62.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.4e-111 405.2 285 69.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.4e-111 405.2 264 81.4
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.7e-110 403.3 273 73.6
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.7e-110 402.1 285 68.8
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.3e-110 401.4 295 69.5
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.4e-109 400.2 301 66.1
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.4e-109 400.2 303 66.7
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.1e-109 399.1 307 68.7
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 9.1e-109 397.5 302 65.9
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.2e-108 397.1 302 65.9
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.2e-108 397.1 301 65.1
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.0e-107 394.0 301 64.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 6.5e-107 391.3 300 66.7
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.9e-106 389.8 268 70.9
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 3.2e-106 389.0 255 78.0
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.2e-106 389.0 283 67.1
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 9.4e-106 387.5 302 63.6
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.4e-104 383.6 266 69.5
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.8e-104 383.3 286 67.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.3e-104 382.9 266 69.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 4.4e-103 378.6 292 64.7
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.8e-102 375.9 300 65.3
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 6.3e-102 374.8 279 66.3
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-101 373.6 265 69.8
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.4e-101 373.6 283 67.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.6e-100 370.2 291 63.9
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.6e-100 369.4 291 63.6
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.6e-100 369.4 262 68.3
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-97 360.5 248 69.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.1e-97 358.2 295 62.7
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.0e-96 355.9 291 62.5
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 4.1e-93 345.5 258 65.9
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 7.0e-93 344.7 273 62.6
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.7e-92 342.8 258 65.9
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 6.5e-91 338.2 262 66.0
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 6.1e-89 331.6 258 64.0
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.7e-87 325.1 248 65.3
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 6.3e-86 321.6 259 63.3
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.6e-84 317.0 249 62.7
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.0e-84 316.6 271 60.1
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.7e-83 313.5 214 72.9
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.8e-80 303.5 202 72.3
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.8e-80 301.6 261 60.2
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 8.9e-80 301.2 225 66.7
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.5e-79 300.4 249 63.1
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 2.0e-79 300.1 215 73.0
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.7e-78 297.0 305 57.0
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.1e-77 294.3 248 61.3
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.2e-76 290.8 254 61.4
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.0e-69 265.0 155 88.4
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 3.6e-65 252.7 219 60.3
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 9.2e-61 238.0 120 97.5
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.9e-58 230.3 299 43.1
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 2.3e-56 223.4 290 45.9
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.2e-55 221.1 155 68.4
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 5.8e-47 192.2 120 75.0
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 3.5e-44 183.0 121 73.6
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 4.6e-44 182.6 269 39.8
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 7.8e-44 181.8 265 40.8
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 8.7e-35 151.8 88 80.7
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-34 151.0 133 60.9
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 7.4e-34 148.7 118 62.7
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 4.2e-29 132.9 91 72.5
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.9e-26 124.0 83 67.5
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-23 114.0 83 65.1
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 2.5e-21 107.1 232 30.6
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.9e-19 99.8 74 67.6
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 8.7e-19 98.6 292 28.8
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.9e-18 97.4 256 29.3
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 9.6e-18 95.1 76 63.2
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.6e-17 94.4 216 30.1
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.8e-16 90.9 152 40.1
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.7e-14 84.3 83 49.4
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 3.8e-14 83.2 210 25.2
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.1e-13 81.6 58 62.1
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 2.5e-13 80.5 41 87.8
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.2e-12 78.2 68 55.9
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.2e-12 78.2 81 51.9
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.3e-11 73.9 87 43.7
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 4.8e-09 66.2 47 59.6
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.1e-08 65.1 310 23.2
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.4e-08 64.7 310 23.2
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 4.1e-08 63.2 52 59.6
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.6e-07 60.5 231 23.8


User provided reference genes

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