Gene: AT5G04240

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G04240
  • Transcript Identifier AT5G04240.1
  • Gene Type Coding gene
  • Location Chr5 : 1169544-1174638 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G04240.1
  • symbol ELF6
  • full_name EARLY FLOWERING 6
  • uniprot Q6BDA0

Descriptions

  • Description Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
  • Computational description EARLY FLOWERING 6 (ELF6); CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: relative of early flowering 6 (TAIR:AT3G48430.1); Has 112631 Blast hits to 36360 proteins in 1127 species: Archae - 0; Bacteria - 99; Metazoa - 105700; Fungi - 2573; Plants - 699; Viruses - 11; Other Eukaryotes - 3549 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic Os03g0151300
GO:0006325
IEA
GOA Databasechromatin organization
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0033169
IMP
Gene Ontologyhistone H3-K9 demethylation2
GO:0009826
IMP
Gene Ontologyunidimensional cell growth2
GO:0009741
IMP
Gene Ontologyresponse to brassinosteroid2
GO:0048579
IMP
Gene Ontologynegative regulation of long-day photoperiodism, flowering3
GO:0048577
IMP
Gene Ontologynegative regulation of short-day photoperiodism, flowering3
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032452
IBA
Gene Ontologyhistone demethylase activity1
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051213
IEA
GOA Databasedioxygenase activity
GO:0034647
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003347 JmjC domain
IPR036236 Zinc finger C2H2 superfamily
IPR003349 JmjN domain
IPR013087 Zinc finger C2H2-type
Mapman id Description
12.3.3.8.6 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM9)