Gene: Solyc04g009500.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc04g009500.4
- Transcript Identifier Solyc04g009500.4.1
- Gene Type Coding gene
- Location SL4.0ch04 : 2955128-2962993 : positive
Gene Family Information
- ID HOM05D000840
- #Genes/#Species 710/97
- Phylogenetic origin
- ID ORTHO05D000670
- #Genes/#Species 693/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc04g009500.4.1
- uniprot A0A3Q7GQ19
- gene_id Solyc04g009500
Descriptions
- Description Mediator of RNA polymerase II transcription subunit 15a (AHRD V3.3 *-* A0A2G2X9T9_CAPBA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045893 | IEA | GOA Database | positive regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0009751 | ISO | PLAZA Integrative Orthology | response to salicylic acid | AT1G15780 |
| GO:0045723 | ISO | PLAZA Integrative Orthology | positive regulation of fatty acid biosynthetic process | AT1G15780 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003713 | IEA | GOA Database | transcription coactivator activity | |
| GO:0003713 | IEA | InterPro | transcription coactivator activity | |
| GO:0031490 | IBA IEA | GOA Database | chromatin DNA binding | |
| GO:0031490 | IEA | InterPro | chromatin DNA binding | |
| GO:0003712 | IEA | GOA Database | transcription coregulator activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G10440 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0016592 | ISO | PLAZA Integrative Orthology | mediator complex | AT1G15780 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044661 | Mediator of RNA polymerase II transcription subunit 15a/b/c-like |
| Mapman id | Description |
|---|---|
| 15.3.4.4.3.5 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED15 |