Gene: Solyc02g089340.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc02g089340.4
- Transcript Identifier Solyc02g089340.4.1
- Gene Type Coding gene
- Location SL4.0ch02 : 49233099-49241182 : positive
Gene Family Information
- ID HOM05D001522
- #Genes/#Species 417/99
- Phylogenetic origin
- ID ORTHO05D001547
- #Genes/#Species 391/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc02g089340.4.1
- uniprot A0A3Q7FBM0
- gene_id Solyc02g089340
Descriptions
- Description DNA-directed RNA polymerase (AHRD V3.3 *** A0A2G3ABW1_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006390 | IBA | GOA Database | mitochondrial transcription |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0034062 | ISO | PLAZA Integrative Orthology | 5'-3' RNA polymerase activity | AT5G15700 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034245 | IBA | GOA Database | mitochondrial DNA-directed RNA polymerase complex | |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G15700 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G15700 |
| GO:0042651 | ISO | PLAZA Integrative Orthology | thylakoid membrane | AT5G15700 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029262 | DNA-directed RNA polymerase, N-terminal |
| IPR037159 | DNA-directed RNA polymerase, N-terminal domain superfamily |
| IPR024075 | DNA-directed RNA polymerase, helix hairpin domain superfamily |
| IPR002092 | DNA-directed RNA polymerase, phage-type |
| IPR043502 | DNA/RNA polymerase superfamily |
| Mapman id | Description |
|---|---|
| 15.6.1.1 | RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) |