Gene: Solyc02g088790.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g088790.3
  • Transcript Identifier Solyc02g088790.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 48812788-48815532 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g088790.3.1
  • uniprot A0A3Q7FBF1
  • gene_id Solyc02g088790

Descriptions

  • Description RNA-binding protein (AHRD V3.3 *-* Q941H8_SOLTU)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G61030
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT5G61030
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT5G61030
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT1G18630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G61030
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT5G61030
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G61030
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT5G61030
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT5G61030
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G74230
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G74230
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G61030
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT1G18630
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT1G18630
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT1G18630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)