Gene: Solyc02g071240.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g071240.3
  • Transcript Identifier Solyc02g071240.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 38713124-38734254 : positive

Gene Family Information

  • ID HOM05D002279
  • #Genes/#Species 296/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g071240.3.1
  • uniprot A0A3Q7F493
  • gene_id Solyc02g071240

Descriptions

  • Description Pre-mRNA-processing factor 39-like protein (AHRD V3.3 *-* A0A2K3NW85_TRIPR)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000395
IBA
GOA DatabasemRNA 5'-splice site recognition
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT1G04080

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0000243
IBA
GOA Databasecommitment complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR003107 HAT (Half-A-TPR) repeat
Mapman id Description
16.2.1.1.5.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP39)