Gene: Solyc01g102750.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc01g102750.3
Transcript Identifier Solyc01g102750.3.1
Gene Type Coding gene
Location SL4.0ch01 : 83757685-83762603 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000544
#Genes/#Species 1005/99
Phylogenetic origin

ID ORTHO05D000479
#Genes/#Species 874/99
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc01g102750.3.1
uniprot A0A3Q7ER08
gene_id Solyc01g102750

Descriptions

Short descriptions
Ortholog descriptions

Description PHD finger protein ALFIN-LIKE 6 (AHRD V3.3 *** A0A2G2XXF4_CAPAN)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	GOA Database	regulation of transcription, DNA-templated
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0055065	ISO	PLAZA Integrative Orthology	metal ion homeostasis	AT2G02470
GO:0048767	ISO	PLAZA Integrative Orthology	root hair elongation	AT2G02470
GO:0016036	ISO	PLAZA Integrative Orthology	cellular response to phosphate starvation	AT2G02470

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0042393	IEA	GOA Database	histone binding
GO:0042393	IEA	InterPro	histone binding
GO:0046872	IEA	GOA Database	metal ion binding
GO:0000976	IBA	GOA Database	transcription cis-regulatory region binding
GO:0003712	IBA	GOA Database	transcription coregulator activity
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT2G02470
GO:0035064	ISO	PLAZA Integrative Orthology	methylated histone binding	AT1G14510

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	IBA IEA	GOA Database	nucleus
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT2G02470

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR045104	Alfin
IPR044104	Alfin1-like, PHD finger
IPR001965	Zinc finger, PHD-type
IPR011011	Zinc finger, FYVE/PHD-type
IPR019787	Zinc finger, PHD-finger
IPR021998	Alfin, N-terminal

Mapman id	Description
12.3.6.2.2	Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.associated factors.methylation reader (Alfin)