Gene: AT5G53060
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G53060
- Transcript Identifier AT5G53060.2
- Gene Type Coding gene
- Location Chr5 : 21515355-21520310 : positive
Gene Family Information
- ID HOM05D000442
- #Genes/#Species 1174/100
- Phylogenetic origin
- ID ORTHO05D007032
- #Genes/#Species 135/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G53060.2
- symbol RCF3
- Alias HOS5,SHI1,SHINY 1
- full_name regulator of CBF gene expression 3
- uniprot Q8W4B1
Descriptions
- Description RNA-binding KH domain-containing protein
- Computational description RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 2883 Blast hits to 1912 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 1739; Fungi - 239; Plants - 817; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink).
- Computational description RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010468 | IMP IBA | Gene Ontology | regulation of gene expression | 1 2 |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0031053 | IMP | Gene Ontology | primary miRNA processing | 3 |
| GO:1900150 | IMP | Gene Ontology | regulation of defense response to fungus | 4 |
| GO:0009867 | IMP | Gene Ontology | jasmonic acid mediated signaling pathway | 4 |
| GO:0010286 | IMP | Gene Ontology | heat acclimation | 2 |
| GO:0006970 | IMP | Gene Ontology | response to osmotic stress | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | IBA | Gene Ontology | mRNA binding | 1 |
| GO:0070878 | IDA | Gene Ontology | primary miRNA binding | 3 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
| GO:0016607 | IEA | GOA Database | nuclear speck | |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0010445 | IDA | Gene Ontology | nuclear dicing body | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |