Gene: SGA_v2.0_scaffold104G30074
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold104G30074
- Transcript Identifier SGA_v2.0_scaffold104T30074
- Gene Type Coding gene
- Location scaffold104 : 82883-86984 : negative
Gene Family Information
- ID HOM05D001060
- #Genes/#Species 575/98
- Phylogenetic origin
- ID ORTHO05D000905
- #Genes/#Species 561/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- product Phytochrome
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009638 | ISO | PLAZA Integrative Orthology | phototropism | AT1G09570 |
| GO:0010374 | ISO | PLAZA Integrative Orthology | stomatal complex development | AT2G18790 |
| GO:0009640 | ISO | PLAZA Integrative Orthology | photomorphogenesis | AT1G09570 |
| GO:0009266 | ISO | PLAZA Integrative Orthology | response to temperature stimulus | AT2G18790 |
| GO:0009585 | ISO | PLAZA Homology (enrichment) | red, far-red light phototransduction | HOM05D001060 |
| GO:0009687 | ISO | PLAZA Integrative Orthology | abscisic acid metabolic process | AT2G18790 |
| GO:0009867 | ISO | PLAZA Integrative Orthology | jasmonic acid mediated signaling pathway | AT2G18790 |
| GO:0017006 | ISO | PLAZA Homology (enrichment) | protein-tetrapyrrole linkage | HOM05D001060 |
| GO:0010203 | ISO | PLAZA Integrative Orthology | response to very low fluence red light stimulus | AT1G09570 |
| GO:0010148 | ISO | PLAZA Integrative Orthology | transpiration | AT2G18790 |
| GO:0017012 | ISO | PLAZA Integrative Orthology | protein-phytochromobilin linkage | AT2G18790 |
| GO:0015979 | ISO | PLAZA Integrative Orthology | photosynthesis | AT2G18790 |
| GO:0010029 | ISO | PLAZA Integrative Orthology | regulation of seed germination | AT2G18790 |
| GO:0031347 | ISO | PLAZA Integrative Orthology | regulation of defense response | AT2G18790 |
| GO:0010244 | ISO | PLAZA Integrative Orthology | response to low fluence blue light stimulus by blue low-fluence system | AT2G18790 |
| GO:2000028 | ISO | PLAZA Integrative Orthology | regulation of photoperiodism, flowering | AT2G18790 |
| GO:0010202 | ISO | PLAZA Integrative Orthology | response to low fluence red light stimulus | AT2G18790 |
| GO:0010201 | ISO | PLAZA Integrative Orthology | response to continuous far red light stimulus by the high-irradiance response system | AT1G09570 |
| GO:0009584 | IEA | InterPro | detection of visible light | |
| GO:0018298 | IEA | InterPro | protein-chromophore linkage | |
| GO:0007165 | IEA | InterPro | signal transduction | |
| GO:0010161 | ISO | PLAZA Integrative Orthology | red light signaling pathway | AT1G09570 |
| GO:0009630 | ISO | PLAZA Integrative Orthology | gravitropism | AT1G09570 |
| GO:0006325 | ISO | PLAZA Integrative Orthology | chromatin organization | AT2G18790 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT2G18790 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009903 | ISO | PLAZA Integrative Orthology | chloroplast avoidance movement | Pp3c25_2610 |
| GO:0009649 | ISO | PLAZA Integrative Orthology | entrainment of circadian clock | AT2G18790 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT2G18790 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT1G09570 |
| GO:0046685 | ISO | PLAZA Integrative Orthology | response to arsenic-containing substance | AT1G09570 |
| GO:0010617 | ISO | PLAZA Integrative Orthology | circadian regulation of calcium ion oscillation | AT2G18790 |
| GO:0010017 | ISO | PLAZA Integrative Orthology | red or far-red light signaling pathway | AT4G16250 |
| GO:0017148 | ISO | PLAZA Integrative Orthology | negative regulation of translation | AT1G09570 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT1G09570 |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT2G18790 |
| GO:0009881 | ISO | PLAZA Homology (enrichment) | photoreceptor activity | HOM05D001060 |
| GO:0004672 | ISO | PLAZA Integrative Orthology | protein kinase activity | AT1G09570 |
| GO:0009883 | ISO | PLAZA Integrative Orthology | red or far-red light photoreceptor activity | AT1G09570 |
| GO:0031517 | ISO | PLAZA Integrative Orthology | red light photoreceptor activity | AT2G18790 |
| GO:0000155 | IEA | InterPro | phosphorelay sensor kinase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT2G18790 |
| GO:0031516 | ISO | PLAZA Integrative Orthology | far-red light photoreceptor activity | AT1G09570 |
| GO:1990841 | ISO | PLAZA Integrative Orthology | promoter-specific chromatin binding | AT2G18790 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G09570 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G09570 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | Pp3c25_2610 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT1G09570 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G18790 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000014 | PAS domain |
| IPR001294 | Phytochrome |
| IPR029016 | GAF-like domain superfamily |
| IPR013515 | Phytochrome, central region |
| IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| IPR035965 | PAS domain superfamily |
| IPR013767 | PAS fold |
| IPR043150 | Phytochrome, PHY domain |
| IPR003018 | GAF domain |
| IPR013654 | PAS fold-2 |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |