Gene: AT4G16250

General Information

Computational description phytochrome D (PHYD); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 26426 Blast hits to 26152 proteins in 3833 species: Archae - 221; Bacteria - 20797; Metazoa - 4; Fungi - 482; Plants - 3855; Viruses - 5; Other Eukaryotes - 1062 (source: NCBI BLink).

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0050896	IEA	GOA Database	response to stimulus
GO:0009903	ISO	PLAZA Integrative Orthology	chloroplast avoidance movement	Pp3c25_2610
GO:0018298	IEA	GOA Database	protein-chromophore linkage
GO:0018298	IEA	InterPro	protein-chromophore linkage
GO:0017006	IEA	Gene Ontology	protein-tetrapyrrole linkage
GO:0017006	IEA	InterPro	protein-tetrapyrrole linkage
GO:0009585	IEA	Gene Ontology	red, far-red light phototransduction
GO:0009585	IEA	InterPro	red, far-red light phototransduction
GO:0009584	IEA	Gene Ontology	detection of visible light
GO:0009584	IEA	InterPro	detection of visible light
GO:0006355	IEA	Gene Ontology	regulation of transcription, DNA-templated
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0007165	IEA	GOA Database	signal transduction
GO:0007165	IEA	InterPro	signal transduction
GO:0000160	IEA	GOA Database	phosphorelay signal transduction system
GO:0010017	IGI	Gene Ontology	red or far-red light signaling pathway	1

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0042803	IEA	Gene Ontology	protein homodimerization activity
GO:0042803	IEA	InterPro	protein homodimerization activity
GO:0009881	IEA	GOA Database	photoreceptor activity
GO:0009881	IEA	InterPro	photoreceptor activity
GO:0005515	IPI	Gene Ontology	protein binding	2
GO:0005515	IEA	InterPro	protein binding
GO:0000155	IEA	Gene Ontology	phosphorelay sensor kinase activity
GO:0000155	IEA	InterPro	phosphorelay sensor kinase activity
GO:0009883	IGI	Gene Ontology	red or far-red light photoreceptor activity	1
GO:0042802	IPI	Gene Ontology	identical protein binding	2

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	Pp3c25_2610
GO:0005634	IDA IBA	Gene Ontology	nucleus	1 3
GO:0005886	ISM	Gene Ontology	plasma membrane

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR035965	PAS domain superfamily
IPR001294	Phytochrome
IPR013767	PAS fold
IPR036890	Histidine kinase/HSP90-like ATPase superfamily
IPR003018	GAF domain
IPR003594	Histidine kinase/HSP90-like ATPase
IPR043150	Phytochrome, PHY domain
IPR000014	PAS domain
IPR012129	Phytochrome A/B/C/D/E
IPR013515	Phytochrome, central region
IPR013654	PAS fold-2
IPR044767	Phytochrome A/B/C/D/E-like, histidine-kinase-related domain
IPR029016	GAF-like domain superfamily

Mapman id	Description
26.1.1.1	External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
26.4.1.2	External stimuli response.temperature.sensing and signalling.temperature sensor protein (PHY-B)