Gene: Pp3c6_16040

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c6_16040
  • Transcript Identifier Pp3c6_16040V3.2
  • Gene Type Coding gene
  • Location Chr06 : 10272354-10274114 : negative

Gene Family Information

  • ID HOM05D005002
  • #Genes/#Species 149/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c6_16040V3.2
  • pacid 32976652
  • alias Pp1s307_70V6
  • alias Phpat.006G057200
  • alias Phypa_110527
  • uniprot A9TSQ0

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0016573
IBA
GOA Databasehistone acetylation
GO:0006367
IBA
GOA Databasetranscription initiation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016251
IBA
GOA DatabaseRNA polymerase II general transcription initiation factor activity
GO:1990841
IBA
GOA Databasepromoter-specific chromatin binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G31720

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0000124
IBA
GOA DatabaseSAGA complex
GO:0005669
IBA
GOA Databasetranscription factor TFIID complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003923 Transcription initiation factor TFIID, 23-30kDa subunit
Mapman id Description
15.3.4.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF10