Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 3.9e-76 288.1 150 100.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 3.0e-44 182.2 129 75.2
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.5e-40 169.9 120 69.2
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 2.2e-39 166.0 115 66.1
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 2.9e-39 165.6 115 70.4
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 6.4e-39 164.5 115 67.0
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 6.4e-39 164.5 116 69.0
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 8.4e-39 164.1 123 64.2
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.4e-38 163.3 115 67.8
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.4e-38 163.3 115 68.7
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.4e-38 163.3 115 68.7
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.4e-38 163.3 128 64.8
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.9e-38 162.9 115 66.1
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.9e-38 162.9 123 65.0
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 2.4e-38 162.5 115 68.7
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 2.4e-38 162.5 135 61.5
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 4.2e-38 161.8 115 65.2
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 5.4e-38 161.4 115 67.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 5.4e-38 161.4 118 65.3
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 5.4e-38 161.4 115 65.2
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 7.1e-38 161.0 118 65.3
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 7.1e-38 161.0 115 67.0
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 7.1e-38 161.0 115 67.0
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 7.1e-38 161.0 132 63.6
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 9.3e-38 160.6 115 65.2
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 9.3e-38 160.6 115 66.1
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 9.3e-38 160.6 115 67.0
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-37 160.2 115 65.2
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-37 160.2 115 65.2
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.2e-37 160.2 115 65.2
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.2e-37 160.2 115 65.2
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.2e-37 160.2 118 66.1
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.2e-37 160.2 115 64.3
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.2e-37 160.2 115 66.1
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.2e-37 160.2 123 64.2
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.6e-37 159.8 115 66.1
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.6e-37 159.8 135 60.0
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.1e-37 159.5 117 64.1
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 2.1e-37 159.5 117 64.1
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.7e-37 159.1 115 65.2
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.7e-37 159.1 115 65.2
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.7e-37 159.1 115 65.2
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.7e-37 159.1 115 65.2
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 2.7e-37 159.1 132 59.1
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.5e-37 158.7 115 65.2
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.5e-37 158.7 115 66.1
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 3.5e-37 158.7 115 65.2
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.5e-37 158.7 115 64.3
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 3.5e-37 158.7 115 64.3
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.6e-37 158.3 115 65.2
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 4.6e-37 158.3 115 66.1
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.6e-37 158.3 116 64.7
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 4.6e-37 158.3 116 64.7
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.0e-37 157.9 115 65.2
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 6.0e-37 157.9 115 67.0
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 7.9e-37 157.5 115 64.3
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 7.9e-37 157.5 132 59.1
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 7.9e-37 157.5 137 57.7
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.0e-36 157.1 115 63.5
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.0e-36 157.1 115 63.5
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.0e-36 157.1 115 63.5
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.0e-36 157.1 115 66.1
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.3e-36 156.8 115 66.1
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.3e-36 156.8 115 65.2
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.8e-36 156.4 115 65.2
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.8e-36 156.4 115 65.2
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.8e-36 156.4 115 65.2
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.8e-36 156.4 115 65.2
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.8e-36 156.4 115 64.3
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 2.3e-36 156.0 115 64.3
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 2.3e-36 156.0 115 64.3
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.3e-36 156.0 115 64.3
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 3.0e-36 155.6 115 67.0
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 3.9e-36 155.2 115 64.3
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 3.9e-36 155.2 115 64.3
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 3.9e-36 155.2 115 64.3
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 3.9e-36 155.2 115 64.3
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.9e-36 155.2 117 65.0
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 5.1e-36 154.8 115 64.3
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 8.7e-36 154.1 115 63.5
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 8.7e-36 154.1 115 62.6
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.1e-35 153.7 115 63.5
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 1.1e-35 153.7 117 64.1
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.5e-35 153.3 111 65.8
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.5e-35 153.3 115 63.5
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.5e-35 153.3 111 65.8
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.9e-35 152.9 115 62.6
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 2.5e-35 152.5 115 62.6
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 3.3e-35 152.1 124 59.7
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.3e-35 152.1 115 65.2
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.3e-35 151.8 115 62.6
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 4.3e-35 151.8 123 61.8
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 4.3e-35 151.8 115 63.5
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 4.3e-35 151.8 115 64.3
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 4.3e-35 151.8 115 62.6
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 7.4e-35 151.0 116 62.9
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.3e-34 150.2 115 60.9
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 2.1e-34 149.4 115 62.6
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 3.7e-34 148.7 115 62.6
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 4.8e-34 148.3 130 56.9
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 4.0e-33 145.2 115 60.0
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.3e-33 144.8 139 54.7
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.2e-32 143.7 140 51.4
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 2.0e-32 142.9 132 54.5
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 1.4e-30 136.7 108 61.1
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 5.5e-30 134.8 97 66.0
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 5.5e-30 134.8 97 66.0
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 7.1e-30 134.4 104 64.4
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 9.3e-30 134.0 117 61.5
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 9.3e-30 134.0 97 67.0
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.2e-29 133.7 97 64.9
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 2.1e-29 132.9 111 60.4
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.1e-29 132.9 97 64.9
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 3.5e-29 132.1 97 64.9
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.0e-28 130.6 98 64.3
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.8e-28 129.8 115 55.7
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 3.0e-28 129.0 97 63.9
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 3.0e-28 129.0 119 55.5
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 6.7e-28 127.9 115 53.9
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 8.7e-28 127.5 97 64.9
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 1.9e-27 126.3 99 60.6
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 9.0e-25 117.5 103 56.3
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 2.9e-23 112.5 102 59.8
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.9e-22 109.8 121 51.2
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 2.1e-21 106.3 115 49.6
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.1e-19 100.5 86 55.8
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 3.3e-19 99.0 172 36.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 7.4e-19 97.8 61 67.2
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 7.4e-19 97.8 143 40.6
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 3.7e-18 95.5 80 61.2
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.4e-17 93.6 80 62.5
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 1.4e-17 93.6 115 43.5
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.4e-17 92.8 75 61.3
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 2.0e-16 89.7 75 61.3
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 3.4e-16 89.0 75 60.0
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 3.4e-16 89.0 84 52.4
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 5.0e-15 85.1 78 55.1
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 3.6e-13 79.0 115 40.9
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 1.9e-11 73.2 145 34.5
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 3.3e-11 72.4 57 63.2
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 4.3e-11 72.0 39 76.9
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.7e-11 70.9 39 74.4
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.7e-11 70.9 39 74.4
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-10 70.5 39 74.4
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 3.7e-10 68.9 57 61.4
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 4.8e-10 68.6 61 57.4
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 8.2e-10 67.8 56 58.9
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.1e-09 67.4 39 69.2
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.5e-08 63.5 76 47.4
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 2.6e-08 62.8 39 66.7
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 9.4e-06 54.3 58 50.0


User provided reference genes

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