Gene: Pp3c5_14060

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c5_14060
  • Transcript Identifier Pp3c5_14060V3.1
  • Gene Type Coding gene
  • Location Chr05 : 10060923-10062854 : positive

Gene Family Information

  • ID HOM05D000377
  • #Genes/#Species 1292/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c5_14060V3.1
  • pacid 32955721
  • alias Phypa_149443
  • alias Pp1s297_45V6
  • alias Phpat.005G052800
  • uniprot A0A7I3ZR10

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway Os01g0192000
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT2G19810
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT2G19810
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G19810
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence Os01g0192000
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G07500
GO:0010187
ISO
PLAZA Integrative Orthologynegative regulation of seed germination AT1G03790
GO:0061157
ISO
PLAZA Integrative OrthologymRNA destabilization AT2G25900

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding AT2G25900
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT2G25900
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44260
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT2G25900
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding Os01g0192000

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G25900
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G03790
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G19810
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G44260
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT5G44260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000571 Zinc finger, CCCH-type
Mapman id Description
16.8.2 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF)