Gene: Pp3c4_12720
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c4_12720
- Transcript Identifier Pp3c4_12720V3.1
- Gene Type Coding gene
- Location Chr04 : 8911427-8912447 : positive
Gene Family Information
- ID HOM05D001725
- #Genes/#Species 375/99
- Phylogenetic origin
- ID ORTHO05D001757
- #Genes/#Species 359/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- name Pp3c4_12720V3.1
- pacid 32919750
- alias Phypa_228370
- alias Pp1s582_5V6
- alias Phpat.004G046500
- uniprot A9RZ45
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0002181 | IBA | GOA Database | cytoplasmic translation | |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G36130 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G18020 |
| GO:0003735 | IBA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003723 | IBA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042788 | ISO | PLAZA Integrative Orthology | polysomal ribosome | AT4G36130 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G36130 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT4G36130 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT2G18020 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G18020 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G18020 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT4G36130 |
| GO:0022625 | IBA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR002171 | Ribosomal protein L2 |
| IPR022669 | Ribosomal protein L2, C-terminal |
| IPR008991 | Translation protein SH3-like domain superfamily |
| IPR022666 | Ribosomal Proteins L2, RNA binding domain |
| IPR014726 | Ribosomal protein L2, domain 3 |
| IPR012340 | Nucleic acid-binding, OB-fold |
| Mapman id | Description |
|---|---|
| 17.1.2.1.7 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL8 |