Gene: AT2G18020

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G18020
  • Transcript Identifier AT2G18020.1
  • Gene Type Coding gene
  • Location Chr2 : 7837151-7838160 : positive

Gene Family Information

  • ID HOM05D001725
  • #Genes/#Species 375/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G18020.1
  • symbol EMB2296
  • full_name embryo defective 2296
  • uniprot P46286

Descriptions

  • Description Ribosomal protein L2 family
  • Computational description embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
IEA
InterProtranslation
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0002181
IBA
Gene Ontologycytoplasmic translation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IBA
Gene Ontologystructural constituent of ribosome1
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0022625
IDA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
IBA
Gene Ontologycytosolic large ribosomal subunit1 5
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005773
IDA
GOA Databasevacuole
GO:0005773
HDA
Gene Ontologyvacuole6
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus7
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0022626
IDA
GOA Databasecytosolic ribosome
GO:0022626
HDA
Gene Ontologycytosolic ribosome8
GO:0005829
IDA
GOA Databasecytosol
GO:0015934
IEA
GOA Databaselarge ribosomal subunit
GO:0000325
HDA
Gene Ontologyplant-type vacuole9
GO:0005794
RCA
Gene OntologyGolgi apparatus10
GO:0005739
HDA
Gene Ontologymitochondrion11
GO:0042788
IDA
GOA Databasepolysomal ribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022669 Ribosomal protein L2, C-terminal
IPR002171 Ribosomal protein L2
IPR008991 Translation protein SH3-like domain superfamily
IPR014722 Ribosomal protein L2, domain 2
IPR012340 Nucleic acid-binding, OB-fold
IPR022666 Ribosomal Proteins L2, RNA binding domain
IPR014726 Ribosomal protein L2, domain 3
Mapman id Description
17.1.2.1.7 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL8