Gene: Pp3c3_25870
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c3_25870
- Transcript Identifier Pp3c3_25870V3.1
- Gene Type Coding gene
- Location Chr03 : 17732685-17734315 : negative
Gene Family Information
- ID HOM05D003559
- #Genes/#Species 192/98
- Phylogenetic origin
- ID ORTHO05D003896
- #Genes/#Species 200/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c3_25870V3.1
- pacid 32940823
- alias Phpat.003G102100
- alias Pp1s288_38V6
- uniprot A9TQH0
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045944 | IBA | GOA Database | positive regulation of transcription by RNA polymerase II | |
| GO:0051123 | IBA | GOA Database | RNA polymerase II preinitiation complex assembly | |
| GO:0006338 | IBA | GOA Database | chromatin remodeling | |
| GO:0000122 | IBA | GOA Database | negative regulation of transcription by RNA polymerase II | |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT5G23090 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046982 | IEA | GOA Database | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0001046 | IBA | GOA Database | core promoter sequence-specific DNA binding | |
| GO:0017025 | IBA | GOA Database | TBP-class protein binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G23090 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT5G23090 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0017054 | IBA | GOA Database | negative cofactor 2 complex | |
| GO:0005671 | IBA | GOA Database | Ada2/Gcn5/Ada3 transcription activator complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G23090 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.3.3.6.1.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component beta |