Gene: Pp3c3_1630

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c3_1630
  • Transcript Identifier Pp3c3_1630V3.2
  • Gene Type Coding gene
  • Location Chr03 : 1005504-1008945 : negative

Gene Family Information

  • ID HOM05D001027
  • #Genes/#Species 591/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c3_1630V3.2
  • pacid 32940374
  • alias Phpat.003G007100
  • alias Phypa_27706
  • alias Pp1s1_349V6
  • uniprot A0A2K1KSX9

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
ISO
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II AT1G49950
GO:0006334
IEA
GOA Databasenucleosome assembly
GO:0006334
IEA
InterPronucleosome assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043047
ISO
PLAZA Integrative Orthologysingle-stranded telomeric DNA binding Zm00001eb357490
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G67580
GO:0042162
ISO
PLAZA Integrative Orthologytelomeric DNA binding AT5G67580
GO:1990841
ISO
PLAZA Integrative Orthologypromoter-specific chromatin binding AT1G49950
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G67580
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT5G67580
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003691
IEA
GOA Databasedouble-stranded telomeric DNA binding
GO:0003691
IEA
InterProdouble-stranded telomeric DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G67580
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT5G67580
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT1G49950
GO:0000786
IEA
GOA Databasenucleosome
GO:0000786
IEA
InterPronucleosome
GO:0005694
IEA
GOA Databasechromosome
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017930 Myb domain
IPR005818 Linker histone H1/H5, domain H15
IPR001005 SANT/Myb domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR044597 Single myb histone 1-6
IPR036390 Winged helix DNA-binding domain superfamily
IPR009057 Homeobox-like domain superfamily
Mapman id Description
12.3.3.2.1.2.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-recruiting factor (TRB)