Gene: AT5G67580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G67580
  • Transcript Identifier AT5G67580.1
  • Gene Type Coding gene
  • Location Chr5 : 26955843-26957073 : negative

Gene Family Information

  • ID HOM05D001027
  • #Genes/#Species 591/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G67580.1
  • symbol TRB2
  • uniprot Q9FJW5

Descriptions

  • Description Homeodomain-like/winged-helix DNA-binding family protein
  • Computational description TRB2; FUNCTIONS IN: single-stranded telomeric DNA binding, DNA binding, protein homodimerization activity, sequence-specific DNA binding transcription factor activity, double-stranded telomeric DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: telomere repeat binding factor 3 (TAIR:AT3G49850.1); Has 792 Blast hits to 790 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 127; Fungi - 75; Plants - 516; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006334
IEA
Gene Ontologynucleosome assembly
GO:0006334
IEA
InterPronucleosome assembly
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042162
IDA
Gene Ontologytelomeric DNA binding1
GO:0003691
IEA
GOA Databasedouble-stranded telomeric DNA binding
GO:0003691
IDA
Gene Ontologydouble-stranded telomeric DNA binding2
GO:0003691
IEA
InterProdouble-stranded telomeric DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding3
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0043047
IDA
Gene Ontologysingle-stranded telomeric DNA binding2
GO:0042803
IPI
Gene Ontologyprotein homodimerization activity2
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
Gene Ontologynucleosome
GO:0000786
IEA
InterPronucleosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus6
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
Gene Ontologynucleolus6
GO:0005694
IEA
GOA Databasechromosome
GO:0000785
IDA
Gene Ontologychromatin6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009057 Homeobox-like domain superfamily
IPR001005 SANT/Myb domain
IPR005818 Linker histone H1/H5, domain H15
IPR044597 Single myb histone 1-6
IPR036390 Winged helix DNA-binding domain superfamily
IPR017930 Myb domain
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
12.3.3.2.1.2.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-recruiting factor (TRB)