Gene: Pp3c3_1240
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c3_1240
- Transcript Identifier Pp3c3_1240V3.1
- Gene Type Coding gene
- Location Chr03 : 779028-781279 : positive
Gene Family Information
- ID HOM05D000944
- #Genes/#Species 636/100
- Phylogenetic origin
- ID ORTHO05D003581
- #Genes/#Species 214/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c3_1240V3.1
- pacid 32944601
- alias Phpat.003G005400
- alias Phypa_63807
- alias Pp1s1_320V6
- uniprot A0A2K1KSV0
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043248 | IBA | GOA Database | proteasome assembly | |
| GO:0006511 | IBA | GOA Database | ubiquitin-dependent protein catabolic process | |
| GO:0016192 | ISO | PLAZA Homology (enrichment) | vesicle-mediated transport | HOM05D000944 |
| GO:0030163 | ISO | PLAZA Integrative Orthology | protein catabolic process | AT1G29150 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT1G29150 |
| GO:0006886 | ISO | PLAZA Homology (enrichment) | intracellular protein transport | HOM05D000944 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0005198 | IBA | GOA Database | structural molecule activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000502 | IEA | GOA Database | proteasome complex | |
| GO:0008541 | IBA | GOA Database | proteasome regulatory particle, lid subcomplex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G29150 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G29150 |
| GO:0016020 | ISO | PLAZA Homology (enrichment) | membrane | HOM05D000944 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G29150 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040773 | 26S proteasome regulatory subunit Rpn6, N-terminal |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR040780 | 6S proteasome subunit Rpn6, C-terminal helix domain |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR000717 | Proteasome component (PCI) domain |
| Mapman id | Description |
|---|---|
| 19.2.5.2.2.5 | Protein homeostasis.ubiquitin-proteasome system.26S proteasome.19S regulatory particle.non-ATPase components.regulatory component RPN6 |