Gene: Pp3c25_3500
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c25_3500
- Transcript Identifier Pp3c25_3500V3.6
- Gene Type Coding gene
- Location Chr25 : 2321088-2326582 : positive
Gene Family Information
- ID HOM05D000974
- #Genes/#Species 616/99
- Phylogenetic origin
- ID ORTHO05D002201
- #Genes/#Species 308/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c25_3500V3.6
- pacid 32980141
- alias Phypa_2556
- alias Phpat.025G014500
- alias Pp1s326_1V6
- uniprot A0A2K1IDP5
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043484 | IBA | GOA Database | regulation of RNA splicing | |
| GO:0006417 | ISO | PLAZA Integrative Orthology | regulation of translation | AT5G53180 |
| GO:0000381 | ISO | PLAZA Integrative Orthology | regulation of alternative mRNA splicing, via spliceosome | AT5G53180 |
| GO:0009846 | ISO | PLAZA Integrative Orthology | pollen germination | AT5G53180 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT5G53180 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003729 | IBA | GOA Database | mRNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G53180 |
| GO:0000932 | ISO | PLAZA Integrative Orthology | P-body | AT5G53180 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR034794 | PTBPH1/PTBPH2, RNA recognition motif 3 |
| IPR021790 | PTBP1, RNA recognition motif 2-like |
| IPR000504 | RNA recognition motif domain |
| IPR035979 | RNA-binding domain superfamily |
| IPR034792 | PTBPH1/PTBPH2, RNA recognition motif 1 |
| IPR034793 | PTBPH1/PTBPH2, RNA recognition motif 2 |
| Mapman id | Description |
|---|---|
| 16.2.6.7 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB) |