Gene: Pp3c20_22630
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c20_22630
- Transcript Identifier Pp3c20_22630V3.2
- Gene Type Coding gene
- Location Chr20 : 14769682-14771595 : positive
Gene Family Information
- ID HOM05D000299
- #Genes/#Species 1506/100
- Phylogenetic origin
- ID ORTHO05D000079
- #Genes/#Species 2384/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- name Pp3c20_22630V3.2
- pacid 32947200
- alias Phypa_34911
- alias Phpat.020G081900
- alias Pp1s241_7V6
- uniprot A0A2K1IW58
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT3G54810 |
| GO:0009416 | ISO | PLAZA Integrative Orthology | response to light stimulus | AT3G51080 |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT3G24050 |
| GO:0045893 | ISO | PLAZA Homology (enrichment) | positive regulation of transcription, DNA-templated | HOM05D000299 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:1905177 | ISO | PLAZA Integrative Orthology | tracheary element differentiation | AT5G25830 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | ISO | PLAZA Homology (enrichment) | DNA binding | HOM05D000299 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT3G24050 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G08000 |
| GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT2G45050 |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0043565 | IEA | GOA Database | sequence-specific DNA binding | |
| GO:0043565 | IEA | InterPro | sequence-specific DNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G34680 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT4G34680 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.1.3.1 | RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA) |