Gene: Pp3c11_6970
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c11_6970
- Transcript Identifier Pp3c11_6970V3.1
- Gene Type Coding gene
- Location Chr11 : 4483229-4486499 : negative
Gene Family Information
- ID HOM05D000548
- #Genes/#Species 997/100
- Phylogenetic origin
- ID ORTHO05D000987
- #Genes/#Species 528/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c11_6970V3.1
- pacid 32958235
- alias Phpat.011G027100
- alias Pp1s262_52V6
- alias Phypa_147519
- uniprot A0A2K1JTS1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006511 | IBA | GOA Database | ubiquitin-dependent protein catabolic process | |
| GO:0016567 | IBA | GOA Database | protein ubiquitination | |
| GO:1901485 | ISO | PLAZA Integrative Orthology | positive regulation of transcription factor catabolic process | AT5G18650 |
| GO:1902456 | ISO | PLAZA Integrative Orthology | regulation of stomatal opening | AT5G22920 |
| GO:1900425 | ISO | PLAZA Integrative Orthology | negative regulation of defense response to bacterium | AT5G18650 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0061630 | IBA | GOA Database | ubiquitin protein ligase activity | |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein transferase activity | AT5G18650 |
| GO:0008134 | ISO | PLAZA Integrative Orthology | transcription factor binding | AT5G18650 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G18650 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR008913 | Zinc finger, CHY-type |
| IPR039512 | RCHY1, zinc-ribbon |
| IPR037274 | Zinc finger, CHY-type superfamily |
| IPR037275 | Zinc finger, CTCHY-type superfamily |
| IPR001841 | Zinc finger, RING-type |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |